PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_55.116
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family AP2
Protein Properties Length: 508aa    MW: 56242.8 Da    PI: 7.0164
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_55.116genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.5e-17164213155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  evm.model.supercontig_55.116 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 213
                                   78*******************......55************************997 PP

2AP243.86.4e-14256306155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  evm.model.supercontig_55.116 256 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 306
                                   89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-9164213IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-15164222IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-17165221IPR001471AP2/ERF domain
SMARTSM003807.5E-32165227IPR001471AP2/ERF domain
CDDcd000184.96E-11165220No hitNo description
PROSITE profilePS5103217.701165221IPR001471AP2/ERF domain
PfamPF008471.4E-9256306IPR001471AP2/ERF domain
CDDcd000188.60E-25256316No hitNo description
SuperFamilySSF541715.89E-17256316IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-16257314IPR001471AP2/ERF domain
SMARTSM003804.2E-31257320IPR001471AP2/ERF domain
PROSITE profilePS5103215.461257314IPR001471AP2/ERF domain
PRINTSPR003674.8E-6258269IPR001471AP2/ERF domain
PRINTSPR003674.8E-6296316IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MWDLNDSPGQ TRDDESEEAC SSQKTSIDGD DDKGKRVGSV SNSSSSAVVV EDGSDDEDGS  60
KMMVAKKRSG RIFGFSVPQE EYLEGDPPVT RQFFPVDDPE MGVSSCGVVG GGSGGGVIGG  120
PGFPRAHWVG VKFCQSDPRR PSGKSMEVSQ PMKKSRRGPR SRSSQYRGVT FYRRTGRWES  180
HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF SIEDYEEDLK QMSNLTKEEF  240
VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE IEAARAYDKA  300
AIKCNGKEAV TNFDPSIYEN ELNAESSGDA ADHNLDLSLG NSASNKQHSG IDHHHHHRLE  360
ADWRNQAFSS KEACRGEGEP QNGYSEAETM QLLSQTHLQS PANSFKSSSE LQRYGQFRRP  420
GDMFQILPPY INPPNYQIQF PSSSHGGRVG SDLALSTSDN HHQWQSGQHH QQLFASAAAS  480
SGFPQQIRNP QNWLQKNGFQ SSLMRPS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652782.10.0PREDICTED: transcription factor APETALA2 isoform X1
SwissprotP479271e-145AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLF6H4H70.0F6H4H7_VITVI; Putative uncharacterized protein
STRINGVIT_07s0031g00220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-127AP2 family protein